Ambry Geneticsposted 15 days ago
Remote • Aliso Viejo, CA
Ambulatory Health Care Services
Bioinformatics Software Engineer II- Remote, USA
Job Category: Engineering
Requisition Number: BIOIN004098
Posted: April 7, 2025
Full-Time
Remote
Locations
Showing 1 location
Remote - USA
Aliso Viejo, CA 92656, USA
Job Details
Description
Compensation: $111,000 - $145,000 per year. You are eligible to a Short-Term Incentive Plan with the target at 7.5% of your annual earnings, terms and conditions apply.
Bioinformatics Software Engineer II- Remote, USA
The Bioinformatics Engineer II is responsible for developing and maintaining computational pipelines for processing clinical sequencing data from customers. This position focuses on implementing robust, scalable bioinformatics solutions using Nextflow, Python, and AWS technologies. This role requires technical proficiency to ensure reliable processing and analysis of customer sequencing data while adhering to quality standards and performance benchmarks.
Essential Functions
Develop and maintain bioinformatics data pipelines using Nextflow and Python
Implement cloud-based solutions utilizing AWS services for efficient data processing
Refactor existing pipelines to improve performance, maintainability, and scalability
Apply software development best practices including version control, testing, and documentation
Troubleshoot and resolve complex technical issues independently
Design and develop new pipeline components and data analysis methods
Collaborate with cross-functional teams to implement clinical requirements
Maintain code quality through code reviews and adherence to coding standards
Monitor pipeline performance and implement optimizations
Other duties as assigned
Qualifications
Bachelor's degree in bioinformatics, computer science, or related discipline
At least 3+ years of relevant industry experience
Strong proficiency with Python programming and Linux environments
Experience with Nextflow or similar workflow management systems
Experience with Illumina sequencing data and bioinformatics NGS pipelines
Knowledge of version control systems, particularly Git
Demonstrated ability to solve problems independently
Experience with bioinformatic data formats and processing methods
Familiarity with AWS cloud services
Ability to work effectively in a collaborative environment
Experience with software testing methodologies
Strong analytical and debugging skills
Preferred
Advanced degree in bioinformatics, computer science, or related disciplines
Experience with clinical genomics
Experience with Docker and containerized applications
CI/CD pipeline experience
Experience working in a cloud environment (AWS)
Experience working in a regulated setting
Equal Opportunity Employer
This employer is required to notify all applicants of their rights pursuant to federal employment laws. For further information, please review the Know Your Rights notice from the Department of Labor.
Job Category: Engineering
Requisition Number: BIOIN004098
Posted: April 7, 2025
Full-Time
Remote
Locations
Showing 1 location
Remote - USA
Aliso Viejo, CA 92656, USA
Job Details
Description
Compensation: $111,000 - $145,000 per year. You are eligible to a Short-Term Incentive Plan with the target at 7.5% of your annual earnings, terms and conditions apply.
Bioinformatics Software Engineer II- Remote, USA
The Bioinformatics Engineer II is responsible for developing and maintaining computational pipelines for processing clinical sequencing data from customers. This position focuses on implementing robust, scalable bioinformatics solutions using Nextflow, Python, and AWS technologies. This role requires technical proficiency to ensure reliable processing and analysis of customer sequencing data while adhering to quality standards and performance benchmarks.
Essential Functions
Develop and maintain bioinformatics data pipelines using Nextflow and Python
Implement cloud-based solutions utilizing AWS services for efficient data processing
Refactor existing pipelines to improve performance, maintainability, and scalability
Apply software development best practices including version control, testing, and documentation
Troubleshoot and resolve complex technical issues independently
Design and develop new pipeline components and data analysis methods
Collaborate with cross-functional teams to implement clinical requirements
Maintain code quality through code reviews and adherence to coding standards
Monitor pipeline performance and implement optimizations
Other duties as assigned
Qualifications
Bachelor's degree in bioinformatics, computer science, or related discipline
At least 3+ years of relevant industry experience
Strong proficiency with Python programming and Linux environments
Experience with Nextflow or similar workflow management systems
Experience with Illumina sequencing data and bioinformatics NGS pipelines
Knowledge of version control systems, particularly Git
Demonstrated ability to solve problems independently
Experience with bioinformatic data formats and processing methods
Familiarity with AWS cloud services
Ability to work effectively in a collaborative environment
Experience with software testing methodologies
Strong analytical and debugging skills
Preferred
Advanced degree in bioinformatics, computer science, or related disciplines
Experience with clinical genomics
Experience with Docker and containerized applications
CI/CD pipeline experience
Experience working in a cloud environment (AWS)
Experience working in a regulated setting
Equal Opportunity Employer
This employer is required to notify all applicants of their rights pursuant to federal employment laws. For further information, please review the Know Your Rights notice from the Department of Labor.
